pfam domain matched to its corresponding interpro id (InterPro Inc)
90
Structured Review
InterPro Inc
pfam domain matched to its corresponding interpro id
Pfam Domain Matched To Its Corresponding Interpro Id, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pfam+domains/pfam+interpro+domains/bio_rxiv__2025__07__19__665706-324-8-8
Average 90 stars, based on 1 article reviews
Pfam Domain Matched To Its Corresponding Interpro Id, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pfam+domains/pfam+interpro+domains/bio_rxiv__2025__07__19__665706-324-8-8
Average 90 stars, based on 1 article reviews
pfam domain matched to its corresponding interpro id - by Bioz Stars,
2026-10
90/100 stars
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other:Article Title: Reclassification of Botryococcus braunii chemical races into separate species based on a comparative genomics analysis Article Snippet: Targets identified by alignment over an E-value threshold of 0.001, were then searched for Pfam domains using Article Title: Adaptive evolution, expression, and functional analysis of Hyou1 gene in response to hypoxic stress in razor clam (Sinonovacula constricta) Article Snippet: Hypoxia upregulated 1 (Hyou1), a member of the heat shock protein 70 (HSP70) family, plays a crucial role in promoting cell survival and cytoprotection under hypoxic stress.. However, the phylogenetic relationship and function of Hyou1 in molluscs remain poorly characterized.. The razor clam Sinonovacula constricta, frequently subjected to hypoxic stress due to its deep-burrowing lifestyle and high-density pond aquaculture conditions, serves as an ideal model for studying hypoxia adaptation mechanisms. Article Title: Protein-RNA Docking Benchmark v3.0 Integrated With Binding Affinity. Article Snippet: We introduce an updated nonredundant proteinRNA docking benchmark version 3.0 (PRDBv3.0) containing 197 test cases curated from 288 unique protein–RNA complexes available in the Protein Data Bank until July 2024.. Among these, 27 are unbound–unbound (UU) type where both the binding partners are available in their unbound states, 160 are unbound–bound (UB) type where only the protein is available in unbound state and remaining 10 are bound–unbound (BU) type where only the RNA is available in unbound state.. The benchmark is categorized into three classes based on the conformational flexibility of the protein interface: 117 rigidbody (R) complexes with minimal structural changes, 41 semiflexible (S) complexes showing moderate conformational changes and 29 fullflexible (F) complexes with significant conformational changes. Article Title: Structural and functional characterization of cellulose synthase proteins (CesA) in rice and their regulation via brassinosteroid signaling under arsenate stress. Article Snippet: Key message CesA proteins response to arsenic stress in rice involves structural and regulatory mechanisms, highlighting the role of BES1/BZR1 transcript levels under arsenate exposure and significant downregulation of BZR1 protein expression.. Abstract Plants interact with several hazardous metalloids during their life cycle through root and soil connection.. One such metalloid, is arsenic and its perilous impact on rice cultivation is a well-known threat. Article Title: Supporting Information for Frequent transitions in mating-type locus chromosomal organization in Malassezia and early steps in sexual reproduction Article Snippet: Finally, funannotate annotate was run to add and integrate functional annotation to the final gene models including: PFAM and Article Title: Leaky ribosomal scanning enables tunable translation of bicistronic ORFs in green algae Article Snippet: 37 The Sequencing:Article Title: TransLeish: Identification of membrane transporters essential for survival of intracellular Leishmania parasites in a systematic gene deletion screen Article Snippet: Initially, the genome of L. mexicana MHOM/GT/2001/U1103 (TritrypDB ) was searched with the keywords “ transporter, transport, exchanger, permease, carrier, channel, porin, pump, symporter, antiporter, uniporter, porter, facilitator, efflux, ABC, ATP-binding cassette, P-glycoprotein, ATPase” . .. Hits were filtered to include only proteins with domains indicative of transporter function, using Pfam domains and other sequence signatures integrated into the Article Title: TransLeish: Identification of membrane transporters essential for survival of intracellular Leishmania parasites in a systematic gene deletion screen Article Snippet: .. This allowed us to gather information on relevant sequence features, including Pfam domains, which are defined from profile hidden Markov models (HMM), Prosite patterns, which are based on multiple sequence alignments and Prosite profiles (weight matrices) and other signatures that are computed by the |